HarvEST software can be set up to query and display any kind of contig assembly, not just the Triticeae and Citrus. We are interested in developing free versions of this software for other organisms. The following list shows what information we would need:
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Raw trace files directly off of the automated sequencer. No quality filtering necessary. |
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Information on the cloning system: vector name and oligos used. |
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A file containing short formatted descriptions of each library in this format: library name, tissue, growth stage, treatment. |
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A cross-reference telling us which sequence name goes with which library. |
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Detailed description sheets for each library (MS word documents are fine). Here is an example. |
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Genbank number cross reference, if available. |
Please contact Steve Wanamaker or Tim Close if you have any questions.